addIdRecords Adds Ego records added having NAs for parent IDs

addIdRecords Adds Ego records added having NAs for parent IDs

Usage

addIdRecords(ids, fullPed, partialPed)

Arguments

ids

character vector of IDs to be added as Ego records having NAs for parent IDs

fullPed

a trimmed pedigree

partialPed

a trimmed pedigree dataframe with uninformative founders removed.

Value

Pedigree with Ego records added having NAs for parent IDs

Examples

uPedOne <- data.frame(id = c("d1", "s2", "d2", "o1", "o2", "o3", "o4"),
                      sire = c("s0", "s4", NA, "s1", "s1", "s2", "s2"),
                      dam = c("d0", "d4", NA, "d1", "d2", "d2", "d2"),
                      sex = c("F", "M", "F", "F", "F", "F", "M"),
                      stringsAsFactors = FALSE)
pedOne <- data.frame(id = c("s1", "d1", "s2", "d2", "o1", "o2", "o3", "o4"),
                     sire = c(NA, "s0", "s4", NA, "s1", "s1", "s2", "s2"),
                     dam = c(NA, "d0", "d4", NA, "d1", "d2", "d2", "d2"),
                     sex = c("M", "F", "M", "F", "F", "F", "F", "M"),
                     stringsAsFactors = FALSE)
pedOne[!pedOne$id %in% uPedOne$id, ]
#>   id sire  dam sex
#> 1 s1 <NA> <NA>   M
newPed <- addIdRecords(ids = "s1", pedOne, uPedOne)
pedOne[!pedOne$id %in% newPed$id, ]
#> [1] id   sire dam  sex 
#> <0 rows> (or 0-length row.names)
newPed[newPed$id == "s1", ]
#>        id   sire    dam    sex
#>    <char> <char> <char> <char>
#> 1:     s1   <NA>   <NA>      M