examplePedigree is a pedigree object created by qcStudbook

Represents pedigree from ExamplePedigree.csv.

id: – character column of animal IDs
sire: – the male parent of the animal indicated by the id column. Unknown sires are indicated with NA
dam: – the female parent of the animal indicated by the id column.Unknown dams are indicated with NA
sex: – factor with levels: "M", "F", "U". Sex specifier for an individual.
gen: – generation number (integers beginning with 0 for the founder generation) of the animal indicated by the id column.
birth: – Date vector of birth dates
exit: – Date vector of exit dates
age: – numerical vector of age in years
ancestry: – character vector or NA with free-form text providing information about the geographic population of origin.
origin: – character vector or NA (optional) that indicates the name of the facility that the individual was imported from if other than local.
status: – character vector or NA. Flag indicating an individual's status as alive, dead, sold, etc. Transformed to factor {levels: ALIVE, DECEASED, SHIPPED, UNKNOWN}. Vector of standardized status codes with the possible values ALIVE, DECEASED, SHIPPED, or UNKNOWN
recordStats: – character vector with value of "added" or "original".

Usage

examplePedigree

An object of class data.frame with 3694 rows and 12 columns.

library(nprcgenekeepr)
data("examplePedigree")
exampleTree <- createPedTree(examplePedigree)
exampleLoops <- findLoops(exampleTree)