Rank animals by genetic value

Part of Genetic Value Analysis Adds a column to rpt containing integers from 1 to nrow, and provides a value designation for each animal of "high value" or "low value"

Usage

rankSubjects(rpt)

Arguments

rpt

a list of data.frame (req. colnames: value) containing genetic value data for the population. Dataframes separate out those animals that are imports, those that have high genome uniqueness (gu > 10%), those that have low mean kinship (mk < 0.25), and the remainder.

Value

A list of dataframes with value and ranking information added.

References

Vinson, A. and Raboin, M.J. (2015) "A Practical Approach for Designing Breeding Groups to Maximize Genetic Diversity in a Large Colony of Captive Rhesus Macaques (Macaca mulatta)" Journal of the American Association for Laboratory Animal Science, 2015 Nov, Vol.54(6), pp.700-707.

Examples

library(nprcgenekeepr)
finalRpt <- nprcgenekeepr::finalRpt
rpt <- rankSubjects(nprcgenekeepr::finalRpt)
rpt[["highGu"]][1, "value"]
#> [1] "High Value"
rpt[["highGu"]][1, "rank"]
#> [1] 1
rpt[["lowMk"]][1, "value"]
#> [1] "High Value"
rpt[["lowMk"]][1, "rank"]
#> [1] 122
rpt[["lowVal"]][1, "value"]
#> [1] "Low Value"
rpt[["lowVal"]][1, "rank"]
#> [1] 190