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Run the GeneKeepR Shiny Application

Source: R/runGenekeepr.R
runGeneKeepR.Rd

Launches the GeneKeepR Shiny application. It uses a module-based architecture with a Home tab and improved UI components. The call blocks the R session until the application is stopped.

Usage

runGeneKeepR(port = 6013L, launch.browser = TRUE)

Arguments

port

Integer port number for the Shiny server (default 6013)

launch.browser

Logical; whether to launch browser (default TRUE)

Value

Called for its side effect; blocks until the app is stopped. Returns, invisibly, the value passed to shiny::stopApp() (normally NULL).

Details

The application has 16 top-level tabs (15 when the ORIP Reporting tab is hidden) and a "More" menu (Settings, About, Help):

  • Home tab with navigation buttons

  • Input tab with enhanced QC display, plus dynamic error and changed columns tabs

  • Pedigree Browser with focal animal support and a Diagram tab

  • Age-Sex Pyramid with enhanced controls

  • Genetic Value Analysis with visualizations

  • Summary Statistics with popovers

  • ORIP Reporting (shown only for the ONPRC site configuration)

  • Breeding Groups with group panels

  • Mate Pair Analysis

  • Genetic Diversity

  • Marker Genetics

  • Cross-Center Identity

  • De-Identified Export

  • Potential Parents

  • Genetic Value Analysis and Breeding Group Description

  • Genetic-Health Trends

runModularApp is a soft-deprecated alias for this function.

See also

runModularApp, a soft-deprecated alias for this function.

Examples

if (FALSE) { # \dontrun{
library(nprcgenekeepr)
runGeneKeepR()
} # }