Converts status indicators to a Standardized code

Part of Pedigree Curation

Usage

convertStatusCodes(status)

Arguments

status

character vector or NA. Flag indicating an individual's status as alive, dead, sold, etc.

Value

A factor vector of the standardized status codes with levels: ALIVE, DECEASED, SHIPPED, and UNKNOWN.

Examples

library(nprcgenekeepr)
original <- c("A", "alive", "Alive", "1", "S", "Sale", "sold", "shipped",
              "D", "d", "dead", "died", "deceased", "2",
              "shiped", "3", "U", "4", "unknown", NA,
              "Unknown", "H", "hermaphrodite", "U", "Unknown", "4")
convertStatusCodes(original)
#>  [1] ALIVE    ALIVE    ALIVE    ALIVE    SHIPPED  SHIPPED  SHIPPED  SHIPPED 
#>  [9] DECEASED DECEASED DECEASED DECEASED DECEASED DECEASED SHIPPED  SHIPPED 
#> [17] UNKNOWN  UNKNOWN  UNKNOWN  UNKNOWN  UNKNOWN  <NA>     <NA>     UNKNOWN 
#> [25] UNKNOWN  UNKNOWN 
#> Levels: ALIVE DECEASED SHIPPED UNKNOWN