Checks to ensure the content and structure are appropriate for genotype
data are in the dataframe and ready for the geneDrop function by
already being mapped to numbers (integer codes are expected, but any numeric
value passes) and placed in columns named first and second.
Only the id column is matched loosely (any
column whose lower-cased name contains "id"). The allele columns
must be named exactly first and second and be numeric; no
check is made of the values' range, so negative, missing or very large
numbers still give TRUE.
Value
A logical value representing whether or not the data.frame passed in
contains genotypic data that can be used. Columns named First or
Second (other cases) give FALSE.
Examples
library(nprcgenekeepr)
rhesusPedigree <- nprcgenekeepr::rhesusPedigree
rhesusGenotypes <- nprcgenekeepr::rhesusGenotypes
pedWithGenotypes <- addGenotype(
ped = rhesusPedigree,
genotype = rhesusGenotypes
)
hasGenotype(pedWithGenotypes)
#> [1] TRUE